FANTOM5

Comprehensive atlas of 27,919 human long non-coding RNA (lncRNA) genes with accurate 5' ends defined by CAGE. Provided a high-confidence catalog of lncRNAs with detailed annotation of their expression patterns, conservation, and genomic features across diverse cell types.

Systematic description of the FANTOM5 data collection, including CAGE profiling of 975 human and 152 mouse samples, transcription factor expression data, and the Zenbu genome browser interface. Data series underpinning the mammalian transcriptome atlases.

Flagship FANTOM5 paper: comprehensive promoter-level expression atlas across 975 human and 152 mouse samples using CAGE (Cap Analysis of Gene Expression) sequencing. Identified and quantified promoter usage across diverse cell types, revealing the core promoter architecture of the mammalian genome.