Tools
GWAS-centric software and pipelines: association tests, fine mapping, PRS, MR, imputation, and visualization.
Contents - GWAS Tools
- Annotation : Tools - 4
- Association_tests : Review - 1 , Tools - 36
- Privacy_Preserving_GWAS_Tool : Tools - 2
- RWAS : Tools - 1
- TWAS : Tools - 12
- Time_to_event_phenotypes : Tools - 1
- eQTL : Tools - 8
- sQTL : Tools - 3
- Colocalization : Tools - 5
- Data_processing : Tools - 13
- Dimension_reduction : Tools - 5
- Drug_discovery : Research - 1 , Tools - 7
- Fine_mapping : Tools - 20
- Functional_prediction : Tools - 2
- Gene_prioritization : Review - 1 , Tools - 4
- Gene_set_pathway_analysis : Review - 1 , Tools - 4
- GxE_interactions : Review - 7 , Tools - 7
- HLA : HLA imputation panel - 3 , HLA imputation pipeline - 1 , HLA imputation tool - 5 , Tutorial - 1
- Heritability_and_genetic_correlation : Tools - 21
- Imputation : Imputation panel - 14 , Imputation server - 8 , Other tools - 1 , Phasing & Imputation tool - 24 , Review - 3 , Structural variants imputation panel - 1
- Mediation : Review - 2 , Software - 1
- Mendelian_randomization : Review - 13 , Tools - 3
- Meta_and_Multi_triat : Comparison - 2 , Concept - 1 , Review - 2 , Tools - 30
- Polygenic_risk_scores : Benchmark - 1 , Research - 2 , Review - 4 , Tools - 56 , Tutorial - 1
- Power_analysis : Tools - 3
- Proteomics : Comparison - 3 , MISC - 5 , Review - 1
- Simulation : Tools - 8
- Tissue_and_single_cell : Tools - 16
- Visualization :
- Chromosome : Tools - 2
- Forest_plot : Tools - 1
- GWAS : Tools - 7
- Heatmap : Tools - 1
- LD : Tools - 3
- UpSet_plots : Tools - 1
- Variants_on_protein : Tools - 4
- Winners_curse : Tools - 1