Complex Trait Genetics Catalog
Hi there, and welcome to CTGCatalog.
I'm Yunye, and I study complex trait genomics. I created this collection to bring together resources that I personally find useful for my work. Researchers who share similar interests, or anyone who wants to start studying this field, may find it useful as well.
CTGCatalog is a GWAS-focused collection for complex trait genetics, including reference data, public summary statistics, software tools, related literature, and AI-related resources. It is a personal curated collection rather than an exhaustive or official resource. AI assists with curation, while all entries are reviewed and maintained manually.
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Biobanks & cohorts
Population studies and biobanks by world region.
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Summary statistics
Public GWAS and omics sumstats (imaging, proteomics, transcriptomics, etc.).
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GWAS Tools
Association tests, fine mapping, PRS, visualization, MR, and more.
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Coding
Python stack, Conda, containers, Linux shell, workflows, and docs/site tooling.
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References
Key papers and resources by topic (genome, variant, phenotype, and more).
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Single cell
scRNA-seq tools: QC, annotation, trajectory, networks, harmonization.
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Projects
Large programs (e.g. 1000 Genomes, UK Biobank, GTEx): one page per project, one card per phase.
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AI
Biomedical AI agents and related tooling.
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Major databases
National and regional omics archives by country (DDBJ, NBDC, NGDC / CNCB, INSDC partners, and similar).
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Journals
Publication venues cited by the catalog, with links and metadata.
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Tags
Tag hub and one page per tag (entries from every section). Click a tag on any card to open its page.
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Catalog statistics
Item counts by biobank region, sumstats field, AI, GWAS tools, and more.
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Trending
Literature trends from PubMed baseline: GWAS-related terms and journal rankings.
What's New
- 2026-07-01 — Added scEPS (Zou L, medRxiv 2026) — single-cell Expression exPlainability Statistics integrating GWAS + scRNA-seq data, identifies disease-associated cell neighborhoods, 1.77×/5.13× more associations than CNA/scDRS — to Tools > Tissue_and_single_cell
- 2026-06-23 — Added INGENE / MODULE (Rossi PMID N/A, Nat Genet 2026) — co-expression-based trans-eQTL models for TWAS: INGENE predicts from cis-regulated co-expression partners, MODULE uses co-eQTL eigengenes; 766 SCZ genes (641 novel) — to Tools > Association_tests > TWAS
- 2026-06-20 — Added MIRA (Ferber D PMID 42310457, Nature 2026) — autonomous AI agent (GPT-4o + o1-preview) in sandboxed FHIR EHR, 11 tools, 85K+ clinical actions, outperforms physicians on 574 MIMIC-IV cases — to AI > Agent
- 2026-06-17 — Added SAGELD (Xu H PMID 42304093, Nat Comput Sci 2026) — scalable G×E method for longitudinal data with SPA GRM, 10-10,000× speedup — to Tools > GxE_interactions
- 2026-06-17 — Added research direction cards for AI tab (hub + 12 topic/subtopic pages) and Tools > GxE_interactions with curated trend summaries and PMID citations