Complex Trait Genetics Catalog
Hi there, and welcome to CTGCatalog.
I'm Yunye, and I study complex trait genomics. I created this collection to bring together resources that I personally find useful for my work. Researchers who share similar interests, or anyone who wants to start studying this field, may find it useful as well.
CTGCatalog is a GWAS-focused collection for complex trait genetics, including reference data, public summary statistics, software tools, related literature, and AI-related resources. It is a personal curated collection rather than an exhaustive or official resource. AI assists with curation, while all entries are reviewed and maintained manually.
-
Biobanks & cohorts
Population studies and biobanks by world region.
-
Summary statistics
Public GWAS and omics sumstats (imaging, proteomics, transcriptomics, etc.).
-
GWAS Tools
Association tests, fine mapping, PRS, visualization, MR, and more.
-
Coding
Python stack, Conda, containers, Linux shell, workflows, and docs/site tooling.
-
References
Key papers and resources by topic (genome, variant, phenotype, and more).
-
Single cell
scRNA-seq tools: QC, annotation, trajectory, networks, harmonization.
-
Projects
Large programs (e.g. 1000 Genomes, UK Biobank, GTEx): one page per project, one card per phase.
-
AI
Biomedical AI agents and related tooling.
-
Major databases
National and regional omics archives by country (DDBJ, NBDC, NGDC / CNCB, INSDC partners, and similar).
-
Journals
Publication venues cited by the catalog, with links and metadata.
-
Tags
Tag hub and one page per tag (entries from every section). Click a tag on any card to open its page.
-
Catalog statistics
Item counts by biobank region, sumstats field, AI, GWAS tools, and more.
-
Trending
Literature trends from PubMed baseline: GWAS-related terms and journal rankings.
What's New
- 2026-06-17 — Added SAGELD (Xu H PMID 42304093, Nat Comput Sci 2026) — scalable G×E method for longitudinal data with SPA GRM, 10-10,000× speedup — to Tools > GxE_interactions
- 2026-06-17 — Added research direction cards for AI tab (hub + 12 topic/subtopic pages) and Tools > GxE_interactions with curated trend summaries and PMID citations
- 2026-06-16 — Restructured AI > GWAS into 5 subcategories: Imaging (7 entries), Phenotyping (3), Methods (4), Post-GWAS (1), Review (2)
- 2026-06-16 — Added 4 AI imaging→GWAS methods to AI > GWAS > Imaging: ML Liver Fat (Haas PMID 34957434, Cell Genomics 2021), DL LV Mass (Khurshid PMID 36944631, Nat Commun 2023), DL Organ MRI (Liu PMID 34128465, eLife 2021), DL LVRWT (Ning PMID 38036550, Nat Commun 2023)
- 2026-06-16 — Added transferGWAS (Kirchler PMID 35640976, Bioinformatics 2022) — deep transfer learning GWAS on full medical images — to AI > GWAS > Imaging