AI Drug discovery
Curation of Drug discovery — listings under the AI tab.
Summary Table
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| NAME | Main citation | YEAR |
|---|---|---|
| AlphaFold2 | Jumper J et al., Nature, 2021 |
2021 |
AlphaFold2
PUBMED_LINK
FULL NAME
AlphaFold2 — Highly Accurate Protein Structure Prediction
DESCRIPTION
AlphaFold2 by DeepMind achieved atomic-level accuracy in protein structure prediction, solving a 50-year grand challenge in biology. Its deep learning architecture (Evoformer + structure module) predicts protein 3D structures from amino acid sequences with accuracy rivaling experimental methods. Transformed drug discovery by enabling structure-based design for previously intractable targets. 44,000+ citations, awarded the 2024 Nobel Prize in Chemistry.
URL
TITLE
Highly accurate protein structure prediction with AlphaFold.
Main citation
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Bodenstein S, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D. (2021) Highly accurate protein structure prediction with AlphaFold. Nature, 596(7873):583-589. doi:10.1038/s41586-021-03819-2. PMID 34265844
ABSTRACT
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort, the structures of around 100,000 unique proteins have been determined, but this represents a small fraction of the billions of known protein sequences. Here we provide the first computational method that can regularly predict protein structures with atomic accuracy even where no similar structure is known. We validated an entirely redesigned version of our neural network-based model, AlphaFold, in the challenging 14th Critical Assessment of protein Structure Prediction (CASP14), demonstrating accuracy competitive with experimental structures in a majority of cases and greatly outperforming other methods.
DOI
10.1038/s41586-021-03819-2