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What's New

A running log of additions and updates to the catalog.

2026-07-09

  • Added Imaging Genomics Review (Bian Y PMID 42409965, Nat Rev Genet 2026) — comprehensive review of imaging-derived phenotypes (IDPs) for genetic analysis: MRI/CT/OCT modalities, DL pipelines (U-Net/nnU-Net/contrastive learning), biobank-scale cohorts, GWAS/MR insights across brain/heart/retinal/abdominal IDPs — to AI > GWAS > Review
  • Added Diet-Inflammation-Insomnia MR (Zhou Y, medRxiv 2026) — high-dimensional MR of 231 dietary × 731 immune traits for insomnia, cross-release FinnGen R12→R13 follow-up, NHANES/CHARLS validation — to Tools > Mendelian_randomization

2026-07-01

  • Added scEPS (Zou L, medRxiv 2026) — single-cell Expression exPlainability Statistics integrating GWAS + scRNA-seq data, identifies disease-associated cell neighborhoods, 1.77×/5.13× more associations than CNA/scDRS — to Tools > Tissue_and_single_cell

2026-06-23

  • Added INGENE / MODULE (Rossi PMID N/A, Nat Genet 2026) — co-expression-based trans-eQTL models for TWAS: INGENE predicts from cis-regulated co-expression partners, MODULE uses co-eQTL eigengenes; 766 SCZ genes (641 novel) — to Tools > Association_tests > TWAS

2026-06-20

  • Added MIRA (Ferber D PMID 42310457, Nature 2026) — autonomous AI agent (GPT-4o + o1-preview) in sandboxed FHIR EHR, 11 tools, 85K+ clinical actions, outperforms physicians on 574 MIMIC-IV cases — to AI > Agent

2026-06-17

  • Added SAGELD (Xu H PMID 42304093, Nat Comput Sci 2026) — scalable G×E method for longitudinal data with SPA GRM, 10-10,000× speedup — to Tools > GxE_interactions
  • Added research direction cards for AI tab (hub + 12 topic/subtopic pages) and Tools > GxE_interactions with curated trend summaries and PMID citations

2026-06-16

  • Restructured AI > GWAS into 5 subcategories: Imaging (7 entries), Phenotyping (3), Methods (4), Post-GWAS (1), Review (2)
  • Added 4 AI imaging→GWAS methods to AI > GWAS > Imaging: ML Liver Fat (Haas PMID 34957434, Cell Genomics 2021), DL LV Mass (Khurshid PMID 36944631, Nat Commun 2023), DL Organ MRI (Liu PMID 34128465, eLife 2021), DL LVRWT (Ning PMID 38036550, Nat Commun 2023)
  • Added transferGWAS (Kirchler PMID 35640976, Bioinformatics 2022) — deep transfer learning GWAS on full medical images — to AI > GWAS > Imaging
  • Added iGWAS (Xie PMID 38728357, PLOS Genetics 2024) — self-supervised deep phenotyping of retinal fundus images for GWAS — to AI > GWAS > Imaging
  • Added 3 more entries to AI > Datasets: PTB-XL (Wagner Sci Data 2020) — largest public 12-lead ECG dataset, zero-barrier open access; BRFSS (CDC, 1984–present) — behavioral risk factor telephone survey, 400K+/yr, free download; eICU-CRD (Pollard PMID 30204154, Sci Data 2018) — multi-center US ICU database, free credentialed access (same as MIMIC)
  • Created AI > Datasets category with 2 entries: MIMIC-IV (Johnson PMID 36596836, Sci Data 2023) — ICU clinical EHR database from Beth Israel Deaconess; NHANES (CDC, 1999–present) — US national health and nutrition survey with 1,600+ XPT files covering demographics, questionnaires, exams, and lab biomarkers

2026-06-15

  • Added 6 pathology foundation models to AI > Imaging: CHIEF (Wang PMID 39232164, Nature 2024), Virchow (Vorontsov PMID 39080966, Nat Med 2024), CONCH (Lu PMID 38504017, Nat Med 2024), KEEP (Zhou PMID 41720085, Cancer Cell 2026), mSTAR (Xu PMID 41387679, Nat Commun 2025), PathOrchestra (Yan PMID 41258399, npj Digit Med 2025)
  • Added 2 bioinformatics benchmarks to AI > Benchmark: DNA Foundation Benchmark (Feng PMID 41315262, Nat Commun 2025), BixBench (Mitchener arXiv 2025, bioinformatics agent benchmark)
  • Added 3 pathology foundation models to AI > Imaging: TITAN (Ding PMID 41193692, Nat Med 2025), Prov-GigaPath (Xu PMID 38778098, Nature 2024), UNI (Chen PMID 38504018, Nat Med 2024)
  • Created 7 new AI categories: Drug discovery, Protein, Imaging, Single cell, Clinical EHR, Multimodal, Benchmark — with 7 representative entries
  • Added 4 papers to AI > Auto research: AI Scientist (Lu PMID 41882133, Nature 2026), Denario (Villaescusa-Navarro arXiv 2025), CodeScientist (Jansen ACL 2025), AutoResearchClaw (AIMING Lab arXiv 2026)
  • Created AI > Auto research category; moved 5 automated discovery systems: Co-Scientist, Robin, SPARK, Virtual Lab, Biomni from AI > Agent
  • Added Hermes Agent (Nous Research, 2026) — self-improving open-source AI agent — to AI > Agent
  • Added rhyQTL (Chen PMID 40341583, Nat Commun 2025) — rhythmic QTLs for 24-hour gene expression across 45 GTEx tissues — to Sumstats > Transcriptomics > Bulk tissue
  • Added Biomni (Huang PMID 40501924, bioRxiv 2025) — a general-purpose biomedical AI agent — to AI > Agent
  • Updated BioMedAgent (Bu PMID 41912700, Nat Biomed Eng 2026) — fixed citation with YEAR/TITLE/ISO/JOURNAL/full authors/abstract — in AI > Agent
  • Added CITATION field to 5 entries: SciToolAgent (Ding PMID 40835791), AI Agents Cancer Review (Truhn PMID 41526721), Cell AI Agents Review (Gao PMID 39486399), Co-Scientist (Gottweis PMID 42156544), Robin (Ghareeb PMID 42156546) — all in AI > Agent
  • Updated MARRVEL-MCP (Everton PMID 42167217, Am J Hum Genet 2026) with complete citation info (vol/issue/page, DOI, abstract, authors) in AI > Agent
  • Updated AI-MARRVEL (Mao PMID 38962029, NEJM AI 2024) with complete citation info (vol/issue, DOI, abstract, full author list) in AI > Agent

2026-06-13

  • Added IBDverse sc-eQTL (Alegbe PMID 42236949, Nature 2026) to Sumstats > Transcriptomics > Single-cell
  • Added Brain sc-eQTL (Haglund PMID 39794547, Nat Genet 2025) to Sumstats > Transcriptomics > Single-cell
  • Added SAGE-net (Spiro PMID 42260311, Nat Methods 2026) to Tools > Functional_prediction

2026-06-11

  • Added 4 AI agent papers to AI > Agent: Robin (PMID 42156546), Co-Scientist (PMID 42156544), DeepRare (PMID 41708847), Virtual Lab (PMID 40730228)
  • Updated scPRS metadata (vol/issue/pages/PMCID/year) in Tools > Polygenic risk scores
  • Added AI agents review from Cell (PMID 39486399) to AI > Agent
  • Added ChemCrow (PMID 38799228) from Nat Mach Intell to AI > Agent
  • Added SciToolAgent (PMID 40835791) from Nat Comput Sci to AI > Agent
  • Added SciSciGPT (PMID 41366152) from Nat Comput Sci to AI > Agent
  • Added CRISPR-GPT (PMID 40738974) from Nat Biomed Eng to AI > Agent
  • Added AI agents in cancer research review (PMID 41526721) from Nat Rev Cancer to AI > Agent
  • Created AI > GWAS section and added 11 papers: Quickdraws (Nat Genet), DL Aorta GWAS (Nat Genet), PoPS (Nat Genet), MILTON (Nat Genet), Causal ML sc (Nat Genet), SynSurr (Nat Genet), DeepNull (Nat Commun), InsightGWAS (Nat Commun), MixEHR-SAGE (Brief Bioinform), DL PRS Survey (Brief Bioinform), GWANN (Brief Bioinform)

2026-06-09

  • Added phbc.json to Tools > Heritability and genetic correlation
  • Added 5 ancient DNA entries to Tools > Population genetics > Ancient DNA