Framework
Summary Table
| NAME | CATEGORY | CITATION | YEAR |
|---|---|---|---|
| Scanpy | Comprehensive | NA | NA |
| Seurat | Comprehensive | NA | NA |
| Giotto | Spatial | NA | NA |
| Squidpy | Spatial | NA | NA |
Comprehensive
Scanpy
- NAME : Scanpy
- URL : https://scanpy.readthedocs.io/en/stable/tutorials/index.html
- PUBMED_LINK : 29409532
Seurat
- NAME : Seurat
Spatial
Giotto
- NAME : Giotto
- DESCRIPTION : The Giotto package consists of two modules, Giotto Analyzer and Viewer (see www.spatialgiotto.com), which provide tools to process, analyze and visualize single-cell spatial expression data.
- URL : https://rubd.github.io/Giotto_site/
- PUBMED_LINK : 33685491
Squidpy
- NAME : Squidpy
- URL : https://squidpy.readthedocs.io/en/stable/index.html#
- PUBMED_LINK : 35102346