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CTGCatalog

Complex Trait Genetics Catalog : A collection of commonly used resources for analysis in complex trait genetics, including reference data, publicly sumstats and commonly used tools. All entries in this repo are manually curated.

Contents

Sumstats and Biobanks/Cohorts

• Biobanks/Cohorts : 56
• Sumstats : Consortiums - 5 , Datasets - 33 , Institution - 2 , Platform - 3
• Proteomics : Aptamer/Somascan - 14 , Comparison - 1 , Consortium - 1 , PEA/OLINK - 18 , Platform - 3 , Review - 1 , immunoassay - 8 , mass spectrometry - 2
• Imaging : GWAS - 20 , Method - 2 , Phenotyping - 1 , Prediction - 1 , Review - 1

Contents - Tools

• Annotation : Tools - 4
• Association_tests : Review - 1 , Tools - 27
  • RWAS : Tools - 1
  • TWAS : Tools - 8
  • eQTL : Tools - 6
  • sQTL : Tools - 3
• Colocalization : Tools - 5
• Data_processing : Tools - 9
• Dimension_reduction : Tools - 5
• Drug_discovery : Research - 1 , Tools - 7
• Fine_mapping : Tools - 17
• Gene_prioritization : Review - 1 , Tools - 4
• Gene_set_pathway_analysis : MISC - 4 , Review - 1
• GxE_interactions : MISC - 2 , Review - 5 , Tools - 1
• HLA : HLA imputation panel - 3 , HLA imputation pipeline - 1 , HLA imputation tool - 5 , Tutorial - 1
• Heritability_and_genetic_correlation : Tools - 19
• Imputation : Imputation panel - 14 , Imputation server - 8 , Other tools - 1 , Phasing & Imputation tool - 24 , Review - 3 , Structural variants imputation panel - 1
• Mendelian_randomization : Review - 13 , Tools - 3
• Meta_and_Multi_triat : Comparison - 2 , Concept - 1 , Review - 2 , Tools - 26
• Polygenic_risk_scores : Benchmark - 1 , Research - 2 , Review - 4 , Tools - 51 , Tutorial - 1
• Power_analysis : Tools - 3
• Proteomics : Comparison - 3 , MISC - 5 , Review - 1
• Simulation : Tools - 8
• Tissue_and_single_cell : Tools - 13
• Winners_curse : Tools - 1

Contents - Visualization

• Chromosome : Tools - 2
• Forest_plot : Tools - 1
• GWAS : Tools - 6
• Heatmap : Tools - 1
• LD : Tools - 3
• Variants_on_protein : Tools - 4

Contents - Population_Genetics

• Admixture : Tools - 2
• Genealogy : Tools - 13
• Phylogenetic_tree : Tools - 1
• Selection : Review - 1 , Tools - 7

About

For more Complex Trait Genomics contents, please check https://gwaslab.com/

Contact : gwaslab@gmail.com